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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1280total RNA-seq
  • 182single cell RNA-seq
  • 16small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1592DNA binding
  • 1482Transcription
  • 544DNA accessibility
  • 39DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • 550February, 2021
  • 180August, 2021
  • 143May, 2020
  • 127May, 2021
  • 120July, 2018
  • 89August, 2017
  • 47July, 2019
  • 47September, 2023
  • 28October, 2019
  • 27May, 2022
  • 25February, 2020
  • 20November, 2019
  • 18February, 2023
  • 15February, 2018
  • 15March, 2020
  • 9April, 2020
  • 6April, 2018
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 3December, 2019
Available data
  • 1292tsv
  • 1154bam
  • 1148bigWig
  • 123fastq
  • 72txt
  • 6csv
Organism
  • 1478Homo sapiens
Biosample type
  • 1227tissue
  • primary cell
  • 138in vitro differentiated cells
  • 115cell line
  • 2stem cell
Organ
  • 466connective tissue
  • 399adipose tissue
  • 324pancreas
  • 188liver
  • 162heart
  • 119kidney
  • 65blood vessel
  • 65vasculature
  • 62bone element
  • 56artery
  • 38epithelium
  • 21brain
  • 19eye
  • 14embryo
  • 9lung
  • 7limb
  • 7musculature of body
  • 5nerve
  • 4skeleton
  • 1spinal cord
Project
  • 1413AMP
  • 47KPMP
  • 9LungMap
  • 9T1D
  • 4community
Genome assembly (visualization)
  • 1149GRCh38
  • 1149hg19
Lab
  • 1315AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 17Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 128inconsistent ontology term
  • 7audit script error
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

1482 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans2926
liver16711
kidney4964
bone tissue58
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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