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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
total RNA-seq
80
single cell RNA-seq
2
small RNA-seq
Assay category
438
Transcription
157
DNA accessibility
65
DNA binding
53
DNA methylation
9
3D chromatin structure
Date released
157
July, 2018
89
August, 2017
42
February, 2023
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
372
bam
368
tsv
366
bigWig
253
fastq
6
txt
Organism
438
Homo sapiens
Biosample type
254
tissue
155
primary cell
29
cell line
Organ
480
connective tissue
438
pancreas
401
adipose tissue
195
epithelium
193
liver
163
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
12
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
376
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
366
GRCh38
366
hg19
Lab
373
AMP-T2D consortium
53
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
biosample_type!
stem cell
month_released!
May, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
438 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
242
6
body of pancreas
3
2
pancreas
1
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
29
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