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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
total RNA-seq
33
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
241
Transcription
172
DNA binding
55
DNA accessibility
6
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Date released
76
February, 2023
58
May, 2021
45
May, 2020
37
September, 2020
12
February, 2021
9
August, 2021
4
March, 2023
Available data
126
fastq
105
tsv
98
bigWig
96
bam
zippedFastqFolder
2
bed bed3+
Organism
237
Homo sapiens
Biosample type
223
primary cell
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
53
epithelium
53
pancreas
9
liver
Project
125
HPAP
96
T1D
16
AMP
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
125
Klaus Kaestner, Upenn
103
Kyle Gaulton, UCSD
9
Bing Ren, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed bedMethyl
zippedFastqFolder
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
241 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
Langerhans cell
33
pancreatic beta cell
11
+ See 24 more…
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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