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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
89
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
226
DNA accessibility
197
Transcription
173
DNA binding
58
DNA methylation
12
3D chromatin structure
Date released
80
February, 2023
56
September, 2020
33
May, 2022
12
February, 2021
August, 2021
6
May, 2021
4
March, 2023
2
December, 2019
2
May, 2020
1
November, 2018
1
September, 2018
Available data
bigWig
465
tsv
463
bam
263
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
193
Homo sapiens
Biosample type
182
primary cell
tissue
11
in vitro differentiated cells
2
cell line
2
stem cell
Organ
53
epithelium
53
pancreas
4
connective tissue
Project
177
HPAP
16
AMP
4
community
Lab
177
Klaus Kaestner, Upenn
11
AMP-T2D consortium
5
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
2
audit script error
biosample_type!
tissue
files.file_type!
bigWig
month_released!
August, 2021
January, 2019
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
pancreatic cell
2
+ See 3 more…
in vitro differentiated cells
embryonic stem cell
5
cardiomyocytes (cardiac muscle cell)
2
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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