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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 496total RNA-seq
  • 189single cell RNA-seq
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 964DNA binding
  • 691Transcription
  • 362DNA accessibility
  • 59DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 143May, 2021
  • 113February, 2021
  • 80February, 2023
  • 56September, 2020
  • 48July, 2018
  • 47May, 2020
  • 43April, 2018
  • 33May, 2022
  • 27September, 2018
  • 24August, 2021
  • 18July, 2019
  • 15February, 2018
  • 8October, 2019
  • 7December, 2019
  • 6March, 2020
  • 5January, 2019
  • 4March, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1November, 2019
Available data
  • 494tsv
  • 485bigWig
  • 483bam
  • 268fastq
  • 52zippedFastqFolder
  • 2bed bed3+
  • 2csv
Organism
  • 687Homo sapiens
Biosample type
  • tissue
  • 436primary cell
  • 138in vitro differentiated cells
  • 115cell line
  • 2stem cell
Organ
  • 199epithelium
  • 188pancreas
  • 57heart
  • 54artery
  • 54blood vessel
  • 54vasculature
  • 24connective tissue
  • 19liver
  • 14embryo
  • 10kidney
  • 3brain
  • 2adipose tissue
  • 2musculature of body
  • 1pericardium
Project
  • 412AMP
  • 177HPAP
  • 98T1D
  • 4community
Genome assembly (visualization)
  • 485hg19
  • 483GRCh38
Lab
  • 398AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 103Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 138inconsistent ontology term
  • 2audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

691 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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