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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1144
total RNA-seq
180
single cell RNA-seq
16
small RNA-seq
Assay category
1391
DNA binding
1340
Transcription
501
DNA accessibility
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Date released
528
February, 2021
173
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
July, 2019
47
September, 2023
43
May, 2021
27
May, 2022
26
October, 2019
25
February, 2020
20
November, 2019
14
February, 2023
13
March, 2020
9
April, 2020
6
April, 2018
5
January, 2019
4
May, 2023
March, 2023
1
December, 2019
Available data
1163
tsv
1027
bam
1021
bigWig
108
fastq
72
txt
6
csv
Organism
1340
Homo sapiens
Biosample type
1227
tissue
436
primary cell
138
in vitro differentiated cells
113
cell line
Organ
457
connective tissue
399
adipose tissue
324
pancreas
188
liver
161
heart
119
kidney
65
blood vessel
65
vasculature
62
bone element
56
artery
36
epithelium
21
brain
19
eye
9
lung
8
embryo
7
limb
7
musculature of body
5
nerve
4
skeleton
1
spinal cord
Project
1275
AMP
47
KPMP
9
LungMap
9
T1D
Genome assembly (visualization)
1022
GRCh38
1022
hg19
Lab
1182
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
9
Xin Sun, UCSD
Audit category:
37
inconsistent ontology term
5
audit script error
month_released!
March, 2023
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
1340 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
liver
167
1
1
kidney
49
64
bone tissue
58
+ See 56 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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