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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
135
single cell RNA-seq
2
small RNA-seq
Assay category
384
Transcription
269
DNA binding
228
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
37
September, 2020
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
254
bigWig
252
bam
252
tsv
248
fastq
zippedFastqFolder
2
bed bed3+
2
csv
Organism
384
Homo sapiens
Biosample type
1165
tissue
384
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
163
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
163
AMP
125
HPAP
96
T1D
Genome assembly (visualization)
254
hg19
252
GRCh38
Lab
161
AMP-T2D consortium
125
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
bone element
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
384 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
Langerhans cell
33
pancreatic beta cell
21
12
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