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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
total RNA-seq
136
single cell RNA-seq
2
small RNA-seq
Assay category
382
Transcription
259
DNA binding
135
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
54
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
38
September, 2020
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
254
bigWig
252
bam
252
tsv
248
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
382
Homo sapiens
Biosample type
923
tissue
382
primary cell
127
in vitro differentiated cells
104
cell line
Organ
163
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
160
AMP
126
HPAP
96
T1D
Genome assembly (visualization)
254
hg19
252
GRCh38
Lab
158
AMP-T2D consortium
126
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
382 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
pancreatic alpha cell
52
12
monocyte
53
exocrine cell
39
Langerhans cell
34
pancreatic beta cell
21
12
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