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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
total RNA-seq
187
single cell RNA-seq
2
small RNA-seq
Assay category
387
Transcription
279
DNA binding
188
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
16
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
248
fastq
207
bigWig
205
bam
205
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
387
Homo sapiens
Biosample type
1080
tissue
387
primary cell
138
in vitro differentiated cells
63
cell line
2
stem cell
Organ
163
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
159
AMP
51
T1D
Genome assembly (visualization)
207
hg19
205
GRCh38
Lab
177
Klaus Kaestner, Upenn
157
AMP-T2D consortium
53
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
month_released!
May, 2020
organ_slims!
artery
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
387 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
52
exocrine cell
39
pancreatic beta cell
21
12
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