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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
992
total RNA-seq
180
single cell RNA-seq
16
small RNA-seq
Assay category
1188
Transcription
602
DNA binding
419
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
450
February, 2021
156
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
24
February, 2020
19
November, 2019
10
February, 2023
9
April, 2020
9
March, 2020
8
October, 2019
7
May, 2022
6
April, 2018
4
May, 2023
1
December, 2019
Available data
1045
tsv
923
bam
917
bigWig
103
fastq
72
txt
6
csv
Organism
1188
Homo sapiens
Biosample type
1188
tissue
436
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
457
connective tissue
399
adipose tissue
291
pancreas
154
liver
115
kidney
109
heart
62
bone element
21
brain
eye
13
blood vessel
13
vasculature
9
lung
7
limb
7
musculature of body
5
nerve
4
artery
4
skeleton
2
epithelium
1
spinal cord
Project
1125
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
918
GRCh38
918
hg19
Lab
1059
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
5
audit script error
1
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
eye
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1188 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
278
6
liver
147
1
1
kidney
49
64
bone tissue
58
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