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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
962
total RNA-seq
74
single cell RNA-seq
16
small RNA-seq
Assay category
1052
Transcription
602
DNA binding
369
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Date released
450
February, 2021
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
27
May, 2022
24
February, 2020
19
November, 2019
10
February, 2023
9
April, 2020
9
March, 2020
8
October, 2019
6
April, 2018
4
May, 2023
1
December, 2019
Available data
946
tsv
923
bam
917
bigWig
103
fastq
15
txt
6
csv
Organism
1052
Homo sapiens
Biosample type
1052
tissue
436
primary cell
131
in vitro differentiated cells
98
cell line
2
stem cell
Organ
457
connective tissue
399
adipose tissue
290
pancreas
174
liver
62
bone element
58
kidney
21
brain
eye
17
heart
9
lung
7
blood vessel
7
limb
7
musculature of body
7
vasculature
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
989
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
918
GRCh38
918
hg19
Lab
961
AMP-T2D consortium
47
KPMP
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
5
audit script error
1
inconsistent ontology term
month_released!
August, 2021
organ_slims!
eye
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1052 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
277
6
liver
167
1
1
bone tissue
58
kidney
56
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