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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 512Transcription
  • 443DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 165August, 2021
  • 94February, 2023
  • 56September, 2020
  • 54May, 2022
  • 47September, 2023
  • 25February, 2020
  • 18February, 2021
  • 14October, 2019
  • 9April, 2020
  • 9May, 2021
  • 4July, 2018
  • 4March, 2023
  • 4May, 2023
  • 3December, 2019
  • 2March, 2020
  • 2May, 2020
  • 1November, 2018
  • 1September, 2018
Available data
  • 1544tsv
  • bam
  • 1402bigWig
  • 371fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 508Homo sapiens
Biosample type
  • 304tissue
  • 184primary cell
  • 11cell line
  • 11in vitro differentiated cells
  • 2stem cell
Organ
  • 113kidney
  • 96heart
  • 67pancreas
  • 55epithelium
  • 31liver
  • 19eye
  • 12brain
  • 9blood vessel
  • 9lung
  • 9vasculature
  • 7connective tissue
  • 4artery
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 3limb
  • 3musculature of body
  • 1nerve
  • 1spinal cord
Project
  • 268AMP
  • 177HPAP
  • 47KPMP
  • 9LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • 3hg19
  • 1GRCh38
Lab
  • 177Klaus Kaestner, Upenn
  • 172AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 13Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 7audit script error
  • 5inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

512 results

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Clear Filters
single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney6449
islet of Langerhans26
liver120
heart left ventricle18
left cardiac atrium18
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
CD8-positive, alpha-beta T cell2
cell line
HepG29
EndoC-BH111
in vitro differentiated cells
embryonic stem cell5
cardiomyocytes (cardiac muscle cell)2
immature adipocyte2
adipocyte1
preadipocyte1
stem cell
SB Ad3.111
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