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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 263single cell RNA-seq
  • 249total RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 516Transcription
  • 482DNA accessibility
  • 481DNA binding
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Date released
  • 165August, 2021
  • 94February, 2023
  • 60May, 2022
  • 56September, 2020
  • 47September, 2023
  • 25February, 2020
  • 18February, 2021
  • 14October, 2019
  • 9April, 2020
  • 7May, 2021
  • 4July, 2018
  • 4March, 2023
  • 4May, 2023
  • 3December, 2019
  • 2March, 2020
  • 2May, 2020
  • 1November, 2018
  • 1September, 2018
Available data
  • 1544tsv
  • 1406bam
  • bigWig
  • 371fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 512Homo sapiens
Biosample type
  • 310tissue
  • 182primary cell
  • 11cell line
  • 11in vitro differentiated cells
  • 2stem cell
Organ
  • 113kidney
  • 96heart
  • 73pancreas
  • 55epithelium
  • 31liver
  • 19eye
  • 12brain
  • 9blood vessel
  • 9lung
  • 9vasculature
  • 7connective tissue
  • 4artery
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 3limb
  • 3musculature of body
  • 1nerve
  • 1spinal cord
Project
  • 272AMP
  • 177HPAP
  • 47KPMP
  • 9LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • 1GRCh38
  • 1hg19
Lab
  • 177Klaus Kaestner, Upenn
  • 172AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 17Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 7audit script error
  • 5inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

516 results

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Clear Filters
single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney6449
islet of Langerhans32
liver120
heart left ventricle18
left cardiac atrium18
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
pancreatic cell2
cell line
HepG29
EndoC-BH111
in vitro differentiated cells
embryonic stem cell5
cardiomyocytes (cardiac muscle cell)2
immature adipocyte2
adipocyte1
preadipocyte1
stem cell
SB Ad3.111
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