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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 235single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1547Transcription
  • 1014DNA binding
  • 731DNA accessibility
  • 76DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 551February, 2021
  • 190May, 2020
  • 182May, 2021
  • 180August, 2021
  • 118July, 2018
  • 65July, 2019
  • 54May, 2022
  • 47September, 2023
  • 30October, 2019
  • 25February, 2020
  • 20November, 2019
  • 18February, 2023
  • 18September, 2020
  • 15March, 2020
  • 9April, 2020
  • 8December, 2019
  • 5April, 2018
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
Available data
  • 1544tsv
  • 1406bam
  • 1402bigWig
  • fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1543Homo sapiens
Biosample type
  • 1124tissue
  • 188primary cell
  • 123in vitro differentiated cells
  • 110cell line
  • 2stem cell
Organ
  • 478connective tissue
  • 401adipose tissue
  • 226pancreas
  • 188liver
  • 166heart
  • 125kidney
  • 67blood vessel
  • 67vasculature
  • 62bone element
  • 58artery
  • 54epithelium
  • 24brain
  • 19eye
  • 10embryo
  • 9lung
  • 9musculature of body
  • 7limb
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1331AMP
  • 105T1D
  • 51HPAP
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1166hg19
  • 1164GRCh38
Lab
  • 1237AMP-T2D consortium
  • 109Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 51Klaus Kaestner, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 132inconsistent ontology term
  • 7audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1547 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans195
liver16711
kidney4964
bone tissue58
primary cell
monocyte54
Langerhans cell51
hepatocyte5
osteoblast5
CD8-positive, alpha-beta T cell4
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG29
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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