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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 212total RNA-seq
  • 158single cell RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1871DNA binding
  • 818DNA accessibility
  • 374Transcription
  • 91DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 90February, 2023
  • 60May, 2022
  • 57August, 2021
  • 56September, 2020
  • 47September, 2023
  • 14October, 2019
  • 13February, 2021
  • 9April, 2020
  • 9May, 2021
  • 4July, 2018
  • 4March, 2023
  • 4May, 2023
  • 2March, 2020
  • 2May, 2020
  • 1December, 2019
  • 1November, 2018
  • 1September, 2018
Available data
  • tsv
  • 1406bam
  • 1402bigWig
  • 371fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 370Homo sapiens
Biosample type
  • 184primary cell
  • 177tissue
  • 9in vitro differentiated cells
  • 2cell line
  • 2stem cell
Organ
  • 108kidney
  • 71pancreas
  • 53epithelium
  • 21liver
  • 14eye
  • 9lung
  • 5connective tissue
  • 4bone element
  • 4skeleton
  • 1adipose tissue
  • 1heart
  • 1musculature of body
Project
  • 177HPAP
  • 130AMP
  • 47KPMP
  • 9LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • 3hg19
  • 1GRCh38
Lab
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 38AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 19Kyle Gaulton, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 2inconsistent ontology term
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

374 results

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Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
CD8-positive, alpha-beta T cell2
tissue
kidney4959
islet of Langerhans31
liver201
lung9
acetabular part of hip bone1
in vitro differentiated cells
embryonic stem cell5
immature adipocyte2
adipocyte1
preadipocyte1
cell line
EndoC-BH111
stem cell
SB Ad3.111
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