Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1315total RNA-seq
  • 211single cell RNA-seq
  • 18small RNA-seq
Assay category
  • 1544Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 550February, 2021
  • 188May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16October, 2019
  • 15February, 2018
  • 13March, 2020
  • 7December, 2019
  • 5January, 2019
  • 4February, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 1544tsv
  • 1406bam
  • 1402bigWig
  • 371fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1544Homo sapiens
Biosample type
  • 1050tissue
  • 252primary cell
  • 129in vitro differentiated cells
  • 113cell line
Organ
  • 476connective tissue
  • 408pancreas
  • 400adipose tissue
  • 172liver
  • 165heart
  • 148epithelium
  • 67blood vessel
  • 67vasculature
  • 58artery
  • 58bone element
  • 24brain
  • 17kidney
  • 14embryo
  • 8musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1446AMP
  • 98T1D
Genome assembly (visualization)
  • 1400GRCh38
  • 1400hg19
Lab
  • 1438AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 137inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

1544 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue381
islet of Langerhans2616
liver1471
bone tissue58
heart left ventricle318
primary cell
monocyte53
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego