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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1420total RNA-seq
  • 267single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1709Transcription
  • 1175DNA binding
  • 826DNA accessibility
  • 87DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 563February, 2021
  • 190May, 2020
  • 182May, 2021
  • 180August, 2021
  • 126July, 2018
  • 89August, 2017
  • 65July, 2019
  • 60May, 2022
  • 47September, 2023
  • 30October, 2019
  • 27September, 2018
  • 25February, 2020
  • 21September, 2020
  • 20November, 2019
  • 18February, 2023
  • 15March, 2020
  • 12April, 2018
  • 9April, 2020
  • 8December, 2019
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 2October, 2018
  • 1August, 2018
  • 1June, 2018
  • 1November, 2018
Available data
  • 1446tsv
  • 1308bam
  • 1304bigWig
  • 180fastq
  • 72txt
  • 33zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1705Homo sapiens
Biosample type
  • 1221tissue
  • 248primary cell
  • 123in vitro differentiated cells
  • 115cell line
  • 2stem cell
Organ
  • 478connective tissue
  • 401adipose tissue
  • 361pancreas
  • 193liver
  • 166heart
  • 125kidney
  • 92epithelium
  • 67blood vessel
  • 67vasculature
  • 62bone element
  • 58artery
  • 24brain
  • 19eye
  • 10embryo
  • 9lung
  • 9musculature of body
  • 7limb
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1478AMP
  • 105T1D
  • 66HPAP
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1305hg19
  • 1303GRCh38
Lab
  • 1378AMP-T2D consortium
  • 115Kyle Gaulton, UCSD
  • 66Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 132inconsistent ontology term
  • 7audit script error
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

1709 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver16711
kidney4964
bone tissue58
primary cell
Langerhans cell66
monocyte54
pancreatic alpha cell102
pancreatic beta cell102
pancreatic acinar cell45
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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