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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
total RNA-seq
143
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
404
Transcription
240
DNA accessibility
194
DNA binding
47
DNA methylation
7
3D chromatin structure
Date released
81
February, 2023
59
May, 2021
58
August, 2021
56
September, 2020
47
September, 2023
45
May, 2020
39
May, 2022
12
February, 2021
4
March, 2023
3
May, 2023
Available data
132
fastq
102
bam
98
bigWig
97
tsv
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
400
Homo sapiens
Biosample type
275
primary cell
120
tissue
5
in vitro differentiated cells
2
cell line
2
stem cell
Organ
107
kidney
66
pancreas
53
epithelium
liver
lung
Project
177
HPAP
101
T1D
75
AMP
47
KPMP
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
177
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
4
Anna Gloyn, Oxford
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
June, 2018
organ_slims!
liver
lung
BIOSAMPLE
ASSAY
404 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
49
58
islet of Langerhans
12
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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