Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
total RNA-seq
152
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
376
Transcription
212
DNA binding
177
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
66
August, 2021
58
May, 2021
53
May, 2022
47
September, 2023
45
May, 2020
40
September, 2020
39
February, 2023
12
February, 2021
9
April, 2020
4
March, 2023
3
May, 2023
Available data
105
tsv
98
bigWig
96
bam
73
fastq
57
txt
52
zippedFastqFolder
2
bed bed3+
Organism
372
Homo sapiens
Biosample type
222
primary cell
136
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
pancreas
53
epithelium
29
liver
9
lung
Project
124
HPAP
96
AMP
96
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
124
Klaus Kaestner, Upenn
103
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
9
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
376 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
exocrine cell
39
CD8-positive, alpha-beta T cell
4
B cell
2
+ See 22 more…
tissue
kidney
49
58
liver
20
lung
9
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
See all biosamples
Download