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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 982total RNA-seq
  • 351single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1863DNA binding
  • 1355Transcription
  • 784DNA accessibility
  • 91DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • February, 2021
  • 190May, 2020
  • 182May, 2021
  • 180August, 2021
  • 168July, 2018
  • 94February, 2023
  • 89August, 2017
  • 65July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 30October, 2019
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 9April, 2020
  • 8December, 2019
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 994tsv
  • 861bam
  • 857bigWig
  • 359fastq
  • 67txt
  • 52zippedFastqFolder
  • 2bed bed3+
  • 2csv
Organism
  • 1351Homo sapiens
Biosample type
  • 777tissue
  • 423primary cell
  • 116in vitro differentiated cells
  • 37cell line
  • 2stem cell
Organ
  • 453pancreas
  • 192liver
  • 175epithelium
  • 120kidney
  • 114heart
  • 32connective tissue
  • 24brain
  • 19eye
  • 15adipose tissue
  • 15blood vessel
  • 15vasculature
  • 14embryo
  • 9lung
  • 9musculature of body
  • 7limb
  • 6artery
  • 5nerve
  • 4bone element
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1025AMP
  • 165HPAP
  • 105T1D
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 858hg19
  • 856GRCh38
Lab
  • 925AMP-T2D consortium
  • 165Klaus Kaestner, Upenn
  • 115Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 95inconsistent ontology term
  • 2audit script error
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

1355 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans2926
liver1671
kidney4959
heart left ventricle318
heart right ventricle117
primary cell
Langerhans cell73
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
HepG214
H1-hESC8
EndoC_BH17
EndoC-BH111
early embryonic cell2
stem cell
SB Ad3.111
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