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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1483total RNA-seq
  • 366single cell RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1871DNA binding
  • 1853Transcription
  • 825DNA accessibility
  • 70DNA methylation
  • 263D chromatin structure
  • 1DNA sequencing
Date released
  • 563February, 2021
  • 190May, 2020
  • 182May, 2021
  • 180August, 2021
  • 168July, 2018
  • 94February, 2023
  • 89August, 2017
  • July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 30October, 2019
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 9April, 2020
  • 8December, 2019
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1479tsv
  • 1341bam
  • 1337bigWig
  • 371fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1849Homo sapiens
Biosample type
  • 1180tissue
  • 418primary cell
  • 138in vitro differentiated cells
  • 115cell line
  • 2stem cell
Organ
  • 475pancreas
  • 465connective tissue
  • 389adipose tissue
  • 196epithelium
  • 186liver
  • 155heart
  • 119kidney
  • 62blood vessel
  • 62bone element
  • 62vasculature
  • 56artery
  • 19eye
  • 14embryo
  • 13brain
  • 9lung
  • 7limb
  • 5musculature of body
  • 5nerve
  • 4skeleton
  • 1spinal cord
Project
  • 1511AMP
  • 177HPAP
  • 105T1D
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1338hg19
  • 1336GRCh38
Lab
  • 1411AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 115Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 139inconsistent ontology term
  • 7audit script error
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

1853 results

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Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans2926
liver1651
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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