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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
1
single cell RNA-seq
Assay category
299
DNA binding
198
Transcription
120
DNA accessibility
15
DNA methylation
10
3D chromatin structure
Date released
563
February, 2021
190
May, 2020
182
May, 2021
180
August, 2021
168
July, 2018
94
February, 2023
89
August, 2017
65
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
30
October, 2019
27
September, 2018
25
February, 2020
20
November, 2019
15
February, 2018
15
March, 2020
9
April, 2020
8
December, 2019
5
January, 2019
4
March, 2023
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
165
fastq
106
tsv
102
bam
102
bigWig
4
txt
Organism
198
Homo sapiens
Biosample type
112
tissue
76
primary cell
6
in vitro differentiated cells
4
cell line
Organ
136
pancreas
41
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
3
heart
2
musculature of body
1
blood vessel
1
liver
1
vasculature
Project
113
AMP
76
HPAP
9
T1D
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
117
AMP-T2D consortium
76
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
198 results
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total RNA-seq
single cell RNA-seq
tissue
islet of Langerhans
96
pigmented layer of retina
2
psoas muscle
2
retina
2
acetabular part of hip bone
1
+ See 9 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
preadipocyte
1
cell line
EndoC_BH1
2
early embryonic cell
2
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