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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
total RNA-seq
3
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1871
DNA binding
832
DNA accessibility
97
DNA methylation
75
Transcription
34
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
45
May, 2020
16
July, 2019
5
January, 2019
4
March, 2023
4
October, 2019
1
February, 2021
Available data
71
bam
71
bigWig
71
tsv
5
fastq
Organism
71
Homo sapiens
Biosample type
62
primary cell
7
cell line
4
tissue
2
stem cell
Organ
6
connective tissue
5
epithelium
5
liver
4
heart
4
kidney
4
limb
4
nerve
3
brain
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
45
T1D
26
AMP
4
community
Genome assembly (visualization)
71
GRCh38
71
hg19
Lab
45
Kyle Gaulton, UCSD
26
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 36 more…
cell line
HepG2
5
EndoC-BH1
1
1
tissue
tibial nerve
4
stem cell
SB Ad3.1
1
1
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