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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1337total RNA-seq
  • 280single cell RNA-seq
  • 7small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1690DNA binding
  • 1628Transcription
  • 692DNA accessibility
  • 96DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 556February, 2021
  • 172August, 2021
  • 147May, 2020
  • 124July, 2018
  • 118May, 2021
  • 89August, 2017
  • 81February, 2023
  • 59May, 2022
  • 56September, 2020
  • 47September, 2023
  • 31July, 2019
  • 27October, 2019
  • 26September, 2018
  • 20November, 2019
  • 14February, 2018
  • 12March, 2020
  • 10April, 2018
  • 9April, 2020
  • 8December, 2019
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 2June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1280tsv
  • 1168bam
  • 1164bigWig
  • 285fastq
  • 68txt
  • 52zippedFastqFolder
  • 6csv
  • 2bed bed3+
Organism
  • 1624Homo sapiens
Biosample type
  • 1150tissue
  • 271primary cell
  • 115cell line
  • 90in vitro differentiated cells
  • 2stem cell
Organ
  • 459connective tissue
  • 397pancreas
  • 392adipose tissue
  • 189liver
  • 152heart
  • 132epithelium
  • 117kidney
  • 62blood vessel
  • 62vasculature
  • 58bone element
  • 54artery
  • 18eye
  • 12embryo
  • 9lung
  • 4brain
  • 4limb
  • 4nerve
  • 2musculature of body
Project
  • 1357AMP
  • 177HPAP
  • 47KPMP
  • 34T1D
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1165hg19
  • 1163GRCh38
Lab
  • 1261AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 41Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 9Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 111inconsistent ontology term
  • 7audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1628 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans282
liver1651
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell521
exocrine cell39
monocyte28
pancreatic beta cell211
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)19
adipocyte4
cardiomyocytes (cardiac muscle cell)22
pancreatic endoderm4
stem cell
SB Ad3.111
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