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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 363single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1861Transcription
  • 1297DNA binding
  • 712DNA accessibility
  • 70DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • 545February, 2021
  • 190May, 2020
  • 182May, 2021
  • 172August, 2021
  • 167July, 2018
  • 94February, 2023
  • 89August, 2017
  • 61July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 27September, 2018
  • 25February, 2020
  • 21October, 2019
  • 20November, 2019
  • 15February, 2018
  • 10March, 2020
  • 9April, 2020
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1December, 2019
  • 1November, 2018
Available data
  • 1487tsv
  • 1351bam
  • 1347bigWig
  • 365fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1857Homo sapiens
Biosample type
  • 1224tissue
  • 426primary cell
  • 114in vitro differentiated cells
  • 95cell line
  • 2stem cell
Organ
  • 481connective tissue
  • 477pancreas
  • 401adipose tissue
  • 193epithelium
  • 182liver
  • 165heart
  • 121kidney
  • 67blood vessel
  • 67vasculature
  • 62bone element
  • 58artery
  • 20brain
  • 19eye
  • 9lung
  • 9musculature of body
  • 7limb
  • 6embryo
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1521AMP
  • 177HPAP
  • 103T1D
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1348hg19
  • 1346GRCh38
Lab
  • 1419AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 115Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 110inconsistent ontology term
  • 5audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1861 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans2926
liver16611
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
EndoC-BH111
early embryonic cell1
stem cell
SB Ad3.111
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