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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 241total RNA-seq
  • 95single cell RNA-seq
  • 11small RNA-seq
Assay category
  • 755DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 3control
Date released
  • 64May, 2021
  • 45July, 2018
  • 43May, 2020
  • 39April, 2018
  • 38July, 2019
  • 25February, 2020
  • 25February, 2021
  • 16August, 2021
  • 13February, 2023
  • 12October, 2019
  • 8March, 2020
  • 7December, 2019
  • 5January, 2019
  • 3August, 2018
  • 1February, 2018
  • 1June, 2018
  • 1May, 2022
  • 1September, 2018
Available data
  • 321tsv
  • 293bam
  • 293bigWig
  • 92fastq
  • 4txt
  • 2csv
Organism
  • 347Homo sapiens
Biosample type
  • 175primary cell
  • 80tissue
  • 72in vitro differentiated cells
  • 20cell line
Organ
  • 84pancreas
  • 77epithelium
  • 24brain
  • 22connective tissue
  • 15heart
  • 15liver
  • 12kidney
  • 10embryo
  • 9adipose tissue
  • 7musculature of body
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 4bone element
  • 4skeleton
  • 3limb
  • 1eye
  • 1nerve
  • 1pericardium
  • 1spinal cord
Project
  • 274AMP
  • 73T1D
Genome assembly (visualization)
  • 293GRCh38
  • 293hg19
Lab
  • 272AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 57inconsistent ontology term
  • 2audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

347 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte26
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans106
heart311
liver31
frontal cortex21
skeletal muscle tissue111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes12
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
H1-hESC8
HepG25
EndoC_BH12
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
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