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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 274single cell RNA-seq
  • 7small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1571Transcription
  • 1116DNA binding
  • 572DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Date released
  • 538February, 2021
  • 164August, 2021
  • 147May, 2020
  • 123July, 2018
  • 118May, 2021
  • 89August, 2017
  • 81February, 2023
  • 59May, 2022
  • 56September, 2020
  • 47September, 2023
  • 27July, 2019
  • 26September, 2018
  • 20November, 2019
  • 18October, 2019
  • 14February, 2018
  • 10April, 2018
  • 9April, 2020
  • 7March, 2020
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 2June, 2018
  • 2October, 2018
  • 1December, 2019
  • 1November, 2018
Available data
  • 1223tsv
  • 1113bam
  • 1109bigWig
  • 279fastq
  • 68txt
  • 52zippedFastqFolder
  • 6csv
  • 2bed bed3+
Organism
  • 1567Homo sapiens
Biosample type
  • 1147tissue
  • 261primary cell
  • 95cell line
  • 66in vitro differentiated cells
  • 2stem cell
Organ
  • 459connective tissue
  • 395pancreas
  • 392adipose tissue
  • 178liver
  • 151heart
  • 124epithelium
  • 113kidney
  • 62blood vessel
  • 62vasculature
  • 58bone element
  • 54artery
  • 18eye
  • 9lung
  • 4embryo
  • 4limb
  • 4nerve
  • 2musculature of body
Project
  • 1302AMP
  • 177HPAP
  • 47KPMP
  • 32T1D
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1110hg19
  • 1108GRCh38
Lab
  • 1204AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 41Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 9Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 82inconsistent ontology term
  • 5audit script error
BIOSAMPLE
ASSAY

1571 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans282
liver1641
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell521
exocrine cell39
monocyte28
pancreatic beta cell211
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
EndoC-BH111
early embryonic cell1
in vitro differentiated cells
cardiomyocytes47
adipocyte4
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
stem cell
SB Ad3.111
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