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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 234ATAC-seq
Assay category
  • 234DNA accessibility
Date released
  • 74August, 2021
  • 35February, 2023
  • 26November, 2019
  • 18February, 2021
  • 14September, 2018
  • 13May, 2021
  • 11May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 6October, 2019
  • 5August, 2017
  • 5September, 2017
  • 3September, 2020
  • 2March, 2019
  • 1November, 2020
Available data
  • 208bed narrowPeak
  • 111bam
  • 64xls
  • 51bigWig
  • 42fastq
  • 24bigBed narrowPeak
  • 2bed bed3
  • 1bed broadPeak
Organism
  • 234Homo sapiens
Biosample type
  • 158tissue
  • 49primary cell
  • 17in vitro differentiated cells
  • 10cell line
Organ
  • 75kidney
  • 59pancreas
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 34epithelium
  • 8bone element
  • 8limb
  • 8skeleton
  • 5connective tissue
  • 3adipose tissue
  • 3liver
  • 2brain
  • 1nerve
  • 1spleen
Project
  • 224AMP
  • 10HPAP
Genome assembly (visualization)
  • 261hg19
  • 234GRCh38
Lab
  • 146AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 11inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

234 results

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Clear Filters
ATAC-seq
tissue
kidney75
coronary artery36
islet of Langerhans22
body of pancreas4
heart left ventricle2
primary cell
monocyte13
pancreatic alpha cell13
pancreatic beta cell10
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
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