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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 502ATAC-seq
Assay category
  • 502DNA accessibility
Date released
  • 103February, 2023
  • 100May, 2020
  • 77May, 2022
  • 76August, 2021
  • 25November, 2019
  • 22October, 2019
  • 18May, 2021
  • 14September, 2018
  • 13February, 2021
  • 11May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 4March, 2019
  • 3September, 2020
  • 2January, 2018
  • 2March, 2020
  • 1November, 2020
Available data
  • 268bed narrowPeak
  • 165bam
  • 133bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 13tsv
  • 11bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 502Homo sapiens
Biosample type
  • 260tissue
  • 200primary cell
  • 42in vitro differentiated cells
  • cell line
Organ
  • 133pancreas
  • 84epithelium
  • 75kidney
  • 39heart
  • 38blood vessel
  • 38vasculature
  • 37artery
  • 28eye
  • 25connective tissue
  • 22liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 442AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 248hg19
  • 224GRCh38
Lab
  • 314AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 23inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

502 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans68
coronary artery36
liver20
retina15
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
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