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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 428ATAC-seq
Assay category
  • 428DNA accessibility
Date released
  • 100May, 2020
  • 91February, 2023
  • 76August, 2021
  • 38May, 2022
  • 25November, 2019
  • 22February, 2021
  • 21October, 2019
  • 18May, 2021
  • 11May, 2023
  • 8October, 2017
  • 6July, 2019
  • 4March, 2019
  • 3January, 2018
  • 2August, 2017
  • 2March, 2020
  • 1November, 2020
Available data
  • 242bed narrowPeak
  • 151bam
  • 102bigWig
  • 64xls
  • 29fastq
  • 13tsv
  • 12bed bed3
  • 7bed bedgraph
  • 5bigBed narrowPeak
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 428Homo sapiens
Biosample type
  • 248tissue
  • 128primary cell
  • 42in vitro differentiated cells
  • 10cell line
Organ
  • 152pancreas
  • epithelium
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 25connective tissue
  • 23liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 417AMP
  • 11T1D
Genome assembly (visualization)
  • 223hg19
  • 200GRCh38
Lab
  • 289AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 22inconsistent ontology term
  • 1inconsistent replicate
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

428 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans68
coronary artery36
liver20
retina15
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
macrophage11
gabaergic neuron3
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
smooth muscle cell of the coronary artery8
GM128781
HepG21
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