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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 379ATAC-seq
Assay category
  • 379DNA accessibility
Date released
  • 100May, 2020
  • 92February, 2023
  • 76August, 2021
  • 22February, 2021
  • 20May, 2022
  • 19October, 2019
  • 18May, 2021
  • 11May, 2023
  • 6July, 2019
  • 6November, 2019
  • 3January, 2018
  • 3October, 2017
  • 2August, 2017
  • 1November, 2020
Available data
  • 214bed narrowPeak
  • 110bam
  • 95bigWig
  • 64xls
  • 12bed bed3
  • 12tsv
  • 7bed bedgraph
  • 5bigBed narrowPeak
  • 5fastq
  • 4bed bed3+
  • 3txt
Organism
  • 379Homo sapiens
Biosample type
  • 198tissue
  • 129primary cell
  • 42in vitro differentiated cells
  • 10cell line
Organ
  • pancreas
  • 103epithelium
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 25connective tissue
  • 23liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 379AMP
Genome assembly (visualization)
  • 190hg19
  • 175GRCh38
Lab
  • 274AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 23inconsistent ontology term
  • 1inconsistent replicate
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

379 results

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Clear Filters
ATAC-seq
tissue
kidney75
coronary artery36
liver20
retina15
pigmented layer of retina12
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
macrophage11
gabaergic neuron3
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
smooth muscle cell of the coronary artery8
GM128781
HepG21
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