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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1266ChIP-seq
Assay category
  • 1266DNA binding
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 9control
  • 5other context
  • 5other post-translational modification
Date released
  • 280November, 2017
  • 176October, 2019
  • 151August, 2017
  • 96May, 2019
  • 90May, 2021
  • 77December, 2017
  • 64April, 2019
  • 63November, 2018
  • 45October, 2018
  • 40May, 2024
  • 32September, 2018
  • 30December, 2018
  • 23June, 2019
  • 21January, 2019
  • 19May, 2020
  • 16August, 2021
  • 16February, 2018
  • 11November, 2019
  • 6October, 2017
  • 5February, 2021
  • 3March, 2020
  • 2September, 2017
Available data
  • 1254bigWig
  • 1224bam
  • 1217bed narrowPeak
  • 767bigBed narrowPeak
  • 652fastq
  • 246tagAlign
  • 76bed broadPeak
  • 62bigBed broadPeak
  • 53bed bed3+
  • 1tagAlign bed3+
Organism
  • 1260Homo sapiens
Biosample type
  • 590tissue
  • 346cell line
  • 207primary cell
  • 120in vitro differentiated cells
  • 3stem cell
Organ
  • 360liver
  • 171brain
  • 157pancreas
  • 113heart
  • 97epithelium
  • 75connective tissue
  • 75vasculature
  • 73blood vessel
  • 54blood
  • 54bodily fluid
  • 47limb
  • 39kidney
  • 25artery
  • 24nerve
  • 18adipose tissue
  • 15embryo
  • 13musculature of body
  • 12spleen
  • 10vein
  • 2eye
  • 1pituitary gland
Project
  • 1178AMP
  • 88T1D
Genome assembly (visualization)
  • 1305hg19
  • 1266GRCh38
Lab
  • 1142AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 47inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1266 results

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Clear Filters
ChIP-seq
tissue
liver75
left cardiac atrium40
heart left ventricle28
body of pancreas26
islet of Langerhans25
cell line
HepG2261
GM1287854
EndoC_BH113
Panc16
smooth muscle cell of the coronary artery4
primary cell
monocyte84
pancreatic endocrine cell23
pancreatic ductal cell13
skeletal muscle myoblast13
endothelial cell of umbilical vein10
in vitro differentiated cells
adipocyte48
hepatocyte14
neural progenitor cell13
pancreatic endoderm13
definitive endodermal cell7
stem cell
hESC3
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