Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
Assay category
  • 964DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 150control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 165May, 2021
  • 120August, 2017
  • 60November, 2018
  • 47October, 2019
  • 46December, 2017
  • 43August, 2021
  • 32September, 2018
  • 31June, 2019
  • 27December, 2018
  • 24February, 2018
  • 18January, 2019
  • 13November, 2019
  • 8February, 2021
  • 5May, 2019
  • 1March, 2020
Available data
  • 856bam
  • 775bigWig
  • 730bed narrowPeak
  • 637fastq
  • 424bigBed narrowPeak
  • 160tagAlign
  • 79bed broadPeak
  • 79bigBed broadPeak
  • 25bed bed3+
  • 3tar
Organism
  • 964Homo sapiens
Biosample type
  • tissue
  • 484cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 397liver
  • 129epithelium
  • 101pancreas
  • 79connective tissue
  • 60blood
  • 60bodily fluid
  • 29vasculature
  • 26blood vessel
  • 25kidney
  • 22embryo
  • 17vein
  • 11heart
  • 10musculature of body
  • 9brain
  • 6artery
  • 3eye
Project
  • 878AMP
  • 86T1D
Genome assembly (visualization)
  • 776hg19
  • 676GRCh38
Lab
  • 792AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 18Bing Ren, UCSD
Audit category:
  • 57inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

964 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
RCC 7860 vector3
iPSC derived cell line2
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
pancreatic alpha cell13
pancreatic beta cell13
pancreatic ductal cell13
epithelial cell of proximal tubule10
pancreatic acinar cell8
skeletal muscle satellite cell8
mesenchymal stem cell7
cardiac fibroblast5
kidney epithelial cell5
hepatocyte4
astrocyte of the cerebellum3
brain microvascular endothelial cell3
cardiac muscle cell3
choroid plexus epithelial cell3
retinal pigment epithelial cell3
naive thymus-derived CD4-positive, alpha-beta T cell2
skeletal muscle cell2
neutrophil1
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
primitive gut cell8
Posterior foregut5
Hepatic endoderm4
cardiomyocytes3
endocrine cell3
pancreatic PP cell3
posterior foregut3
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego