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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1735ChIP-seq
Assay category
  • 1735DNA binding
Target of assay
  • 960histone modification
  • 959histone
  • 487narrow histone mark
  • 471broad histone mark
  • 456transcription factor
  • 315control
  • 89recombinant protein
  • 79RNA binding protein
  • 16chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 384November, 2017
  • 288August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 80April, 2019
  • 53October, 2018
  • 51November, 2018
  • 50May, 2020
  • 43August, 2021
  • 42December, 2017
  • 40May, 2024
  • 32December, 2018
  • 32September, 2018
  • 31June, 2019
  • 24February, 2018
  • 15October, 2017
  • 13January, 2019
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1442bam
  • 1276bigWig
  • 1216bed narrowPeak
  • 721fastq
  • 715bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 38bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1728Homo sapiens
Biosample type
  • 870tissue
  • 436cell line
  • 279primary cell
  • 150in vitro differentiated cells
Organ
  • 492liver
  • 218brain
  • 196pancreas
  • 147connective tissue
  • 134heart
  • 110epithelium
  • 102vasculature
  • 99blood vessel
  • 72adipose tissue
  • 66limb
  • 52kidney
  • 50blood
  • 50bodily fluid
  • 39musculature of body
  • 35nerve
  • 34artery
  • 17vein
  • 13spleen
  • 9embryo
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1647AMP
  • 88T1D
Genome assembly (visualization)
  • 1187hg19
  • 1149GRCh38
Lab
  • 1523AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 55inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

1735 results

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Clear Filters
ChIP-seq
tissue
liver144
islet of Langerhans69
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
cell line
HepG2340
GM1287850
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte62
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm9
cardiomyocytes3
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