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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1718ChIP-seq
Assay category
  • 1718DNA binding
Target of assay
  • 939histone modification
  • 938histone
  • 481narrow histone mark
  • 474transcription factor
  • 457broad histone mark
  • 300control
  • 104RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 241October, 2019
  • 179August, 2017
  • 165May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 70November, 2018
  • 51October, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 25January, 2019
  • 24February, 2018
  • 19June, 2019
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1476bam
  • 1315bigWig
  • 1267bed narrowPeak
  • 786bigBed narrowPeak
  • 767fastq
  • 376tagAlign
  • 113bed broadPeak
  • 79bigBed broadPeak
  • 42bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1711Homo sapiens
Biosample type
  • 833tissue
  • 484cell line
  • 267primary cell
  • 131in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1630AMP
  • 88T1D
Genome assembly (visualization)
  • 1229hg19
  • 1191GRCh38
Lab
  • 1506AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 48inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 72missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

1718 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans70
left cardiac atrium40
body of pancreas35
heart left ventricle35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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