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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1742ChIP-seq
Assay category
  • 1742DNA binding
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 308control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 400November, 2017
  • 270August, 2017
  • 218October, 2019
  • 161May, 2021
  • 115May, 2019
  • 80April, 2019
  • 75December, 2017
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 40May, 2024
  • 39August, 2021
  • 34December, 2018
  • 25January, 2019
  • 25June, 2019
  • 24February, 2018
  • 15October, 2017
  • 11September, 2018
  • 8February, 2021
  • 6September, 2017
  • 2March, 2020
Available data
  • 1449bam
  • 1289bigWig
  • 1228bed narrowPeak
  • 785fastq
  • 765bigBed narrowPeak
  • 391tagAlign
  • 108bed broadPeak
  • 73bigBed broadPeak
  • 50bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1735Homo sapiens
Biosample type
  • 907tissue
  • 469cell line
  • 187primary cell
  • 176in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1656AMP
  • 86T1D
Genome assembly (visualization)
  • 1204hg19
  • 1169GRCh38
Lab
  • 1530AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 34inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 68missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1742 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
Panc113
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
skeletal muscle myoblast15
skeletal muscle satellite cell8
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
definitive endodermal cell8
stem cell
hESC3
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