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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1319ChIP-seq
Assay category
  • 1319DNA binding
Target of assay
  • 914histone
  • 914histone modification
  • 459broad histone mark
  • 454narrow histone mark
  • 227control
  • 176transcription factor
  • 56RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 248August, 2017
  • 237October, 2019
  • 165May, 2021
  • 120May, 2019
  • 91November, 2017
  • 80April, 2019
  • 74October, 2018
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31December, 2017
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 21August, 2021
  • 21November, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1068bam
  • 958bigWig
  • 912bed narrowPeak
  • 449bigBed narrowPeak
  • 405fastq
  • 312tagAlign
  • 56bed broadPeak
  • 47bed bed3+
  • 21bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 1312Homo sapiens
Biosample type
  • 752tissue
  • 275primary cell
  • 183in vitro differentiated cells
  • 106cell line
  • 3stem cell
Organ
  • liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1231AMP
  • 88T1D
Genome assembly (visualization)
  • 906GRCh38
  • 876hg19
Lab
  • 1125AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 59inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

1319 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
heart left ventricle35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
definitive endodermal cell8
cell line
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
stem cell
hESC3
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