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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
Assay category
  • 1653DNA binding
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 287control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 229October, 2019
  • 202August, 2017
  • 161May, 2021
  • 118May, 2019
  • 94December, 2017
  • 80April, 2019
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 23October, 2018
  • 15October, 2017
  • 8February, 2021
Available data
  • 1380bam
  • 1229bigWig
  • 1185bed narrowPeak
  • 742bigBed narrowPeak
  • 710fastq
  • 379tagAlign
  • 102bed broadPeak
  • 79bigBed broadPeak
  • 32bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1653Homo sapiens
Biosample type
  • 790tissue
  • 456cell line
  • 209primary cell
  • 195in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1569AMP
  • 84T1D
Genome assembly (visualization)
  • 1142hg19
  • 1109GRCh38
Lab
  • 1441AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 44inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1653 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver145
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
tibial nerve35
cell line
HepG2378
GM1287860
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein17
skeletal muscle myoblast15
epithelial cell of proximal tubule10
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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