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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
Assay category
  • 153DNA binding
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 117August, 2017
  • 23October, 2018
  • 12June, 2019
  • 1October, 2019
Available data
  • 102bam
  • 90fastq
  • 75bigWig
  • 58bed narrowPeak
  • 22tagAlign
  • 15bigBed narrowPeak
  • 11bed bed3+
  • 1bed broadPeak
Organism
  • 153Homo sapiens
Biosample type
  • 74tissue
  • 67in vitro differentiated cells
  • 12primary cell
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 153AMP
Genome assembly (visualization)
  • 76hg19
  • 75GRCh38
Lab
  • 153AMP-T2D consortium
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

153 results

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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue36
subcutaneous adipose tissue12
white adipose tissue12
omental fat pad11
adipose tissue2
in vitro differentiated cells
adipocyte67
primary cell
mesenchymal stem cell7
cardiac fibroblast5
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