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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
Assay category
  • 218DNA binding
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 48control
  • 19transcription factor
  • 9RNA binding protein
Date released
  • 94August, 2017
  • 51October, 2018
  • 32September, 2018
  • 13November, 2019
  • 13October, 2019
  • 6September, 2017
  • 4May, 2021
  • 3March, 2020
  • 2May, 2019
Available data
  • 198bam
  • 161bigWig
  • 147fastq
  • 140bed narrowPeak
  • 59bigBed narrowPeak
  • 21bed bed3+
  • 19tagAlign
  • 12bed broadPeak
Organism
  • 211Homo sapiens
Biosample type
  • 117tissue
  • 70primary cell
  • 28cell line
  • 3in vitro differentiated cells
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 214AMP
  • 4T1D
Genome assembly (visualization)
  • 163hg19
  • 157GRCh38
Lab
  • 218AMP-T2D consortium
Audit category:
  • 15inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

218 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans50
body of pancreas35
endocrine pancreas16
pancreas16
primary cell
pancreatic endocrine cell23
pancreatic alpha cell13
pancreatic beta cell13
pancreatic ductal cell13
pancreatic acinar cell8
cell line
EndoC_BH115
Panc113
in vitro differentiated cells
pancreatic PP cell3
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