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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1370ChIP-seq
Assay category
  • 1370DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • broad histone mark
  • 335control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 356November, 2017
  • 187August, 2017
  • 187October, 2019
  • 89May, 2021
  • 79December, 2017
  • 70November, 2018
  • 62May, 2019
  • 55October, 2018
  • 50May, 2020
  • 43April, 2019
  • 34August, 2021
  • 34December, 2018
  • 23June, 2019
  • 21January, 2019
  • 20May, 2024
  • 16February, 2018
  • 15September, 2018
  • 8February, 2021
  • 7November, 2019
  • 6September, 2017
  • 5October, 2017
  • 3March, 2020
Available data
  • 1200bam
  • 963bigWig
  • 905bed narrowPeak
  • 739fastq
  • 559bigBed narrowPeak
  • 251tagAlign
  • 78bed broadPeak
  • 63bigBed broadPeak
  • 41bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1367Homo sapiens
Biosample type
  • 604tissue
  • 465cell line
  • 157primary cell
  • 142in vitro differentiated cells
  • 2stem cell
Organ
  • 510liver
  • 148brain
  • 140pancreas
  • 109connective tissue
  • 85epithelium
  • 77heart
  • 60blood
  • 60bodily fluid
  • 57vasculature
  • 54blood vessel
  • 53adipose tissue
  • 37kidney
  • 32limb
  • 20artery
  • 19musculature of body
  • 19nerve
  • 18embryo
  • 16spleen
  • 8vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1326AMP
  • 44T1D
Genome assembly (visualization)
  • 934hg19
  • 874GRCh38
Lab
  • 1253AMP-T2D consortium
  • 80Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 17Bing Ren, UCSD
Audit category:
  • 45inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 64missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

1370 results

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Clear Filters
ChIP-seq
tissue
liver123
islet of Langerhans57
body of pancreas24
heart left ventricle20
left cardiac atrium20
cell line
HepG2369
GM1287860
EndoC_BH19
Panc19
smooth muscle cell of the coronary artery6
primary cell
monocyte41
CD8-positive, alpha-beta T cell13
pancreatic endocrine cell12
pancreatic alpha cell10
pancreatic beta cell10
in vitro differentiated cells
adipocyte47
embryonic stem cell29
neural progenitor cell14
pancreatic endoderm14
hepatocyte8
stem cell
hESC2
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