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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
Hi-C
Assay category
31
3D chromatin structure
Date released
10
March, 2020
8
July, 2019
5
October, 2019
3
August, 2021
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
20
hic
17
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
1
fastq
Organism
31
Homo sapiens
Biosample type
16
tissue
7
primary cell
4
cell line
4
in vitro differentiated cells
Organ
6
musculature of body
6
pancreas
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
30
AMP
1
ITG
Genome assembly (visualization)
24
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
3
Bing Ren, UCSD
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
31 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 1 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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