Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 332single cell RNA-seq
Assay category
  • 332Transcription
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 47September, 2023
  • 39September, 2020
  • 37July, 2018
  • 34May, 2022
  • 28April, 2018
  • 18February, 2021
  • 9April, 2020
  • 3December, 2019
  • 3July, 2019
  • 3May, 2023
  • 2August, 2018
  • 2June, 2018
  • 1February, 2023
Available data
  • 177tsv
  • 98fastq
  • 72bam
  • 72bigWig
  • 51zippedFastqFolder
  • 13txt
  • 6csv
Organism
  • 332Homo sapiens
Biosample type
  • 180tissue
  • 150primary cell
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 64kidney
  • 54pancreas
  • 44epithelium
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 192AMP
  • 84HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 72GRCh38
  • 72hg19
Lab
  • 181AMP-T2D consortium
  • 84Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 9inconsistent ontology term
  • 7audit script error
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

332 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
primary cell
Langerhans cell84
pancreatic acinar cell11
pancreatic ductal cell7
pancreatic alpha cell6
pancreatic beta cell6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego