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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
170
ChIP-seq
ATAC-seq
16
snATAC-seq
1
pCHi-C
Assay category
190
Transcription
170
DNA binding
16
DNA accessibility
Target of assay
119
histone
119
histone modification
61
narrow histone mark
58
broad histone mark
46
control
5
RNA binding protein
5
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
358
bam
312
bigWig
189
tsv
124
bed narrowPeak
97
bigBed narrowPeak
50
tagAlign
Organism
377
Homo sapiens
Biosample type
316
tissue
60
primary cell
1
cell line
Organ
194
liver
50
blood vessel
50
vasculature
28
brain
21
heart
10
pancreas
8
blood
8
bodily fluid
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
Project
316
AMP
61
T1D
Genome assembly (visualization)
312
hg19
303
GRCh38
Lab
316
AMP-T2D consortium
61
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_title!
ATAC-seq
assay_title!!
ATAC-seq
BIOSAMPLE
ASSAY
377 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
tissue
liver
143
50
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 9 more…
primary cell
peripheral blood mononuclear cell
8
kidney epithelial cell
5
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 24 more…
cell line
HepG2
1
See all biosamples
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