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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
January, 2019
6
November, 2018
4
December, 2018
1
March, 2020
Available data
17
bam
17
fastq
9
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
18
tissue
Organ
775
pancreas
619
connective tissue
468
adipose tissue
430
liver
412
epithelium
329
heart
279
brain
269
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
musculature of body
91
artery
42
nerve
34
embryo
32
eye
22
vein
20
lung
18
spleen
18
ureter
17
blood
17
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
18
AMP-T2D consortium
assay_title!
ATAC-seq
shRNA RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
14
2
1
1
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