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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
59
Transcription
1
DNA accessibility
Date released
84
February, 2021
49
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3111
bam
2927
bigWig
1539
bed narrowPeak
1375
tsv
1163
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
145
txt
62
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
144
Homo sapiens
Biosample type
144
tissue
1
cell line
Organ
88
bone element
49
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
145
AMP
Genome assembly (visualization)
1
hg19
Lab
90
AMP-T2D consortium
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
CRISPR RNA-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
145 results
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RNA microarray
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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