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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
23
DNA binding
2
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
423
bam
405
bigWig
401
tsv
25
fastq
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
428
Homo sapiens
Biosample type
426
tissue
2
primary cell
1
in vitro differentiated cells
Organ
715
liver
608
pancreas
535
connective tissue
429
adipose tissue
394
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
69
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
429
AMP
Genome assembly (visualization)
406
GRCh38
406
hg19
Lab
429
AMP-T2D consortium
assay_title!
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Mark McCarthy, Oxford
month_released!
August, 2017
BIOSAMPLE
ASSAY
429 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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