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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
10
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
Available data
56
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
82
Homo sapiens
Biosample type
72
tissue
10
primary cell
Organ
708
liver
682
pancreas
624
connective tissue
473
adipose tissue
339
epithelium
306
heart
264
kidney
165
brain
164
vasculature
159
blood vessel
147
bone element
99
limb
90
artery
82
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
22
spleen
20
lung
18
ureter
16
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
61
hg19
48
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
CRISPRi RNA-seq
month_released!
April, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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