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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
101
ChIP-seq
ATAC-seq
74
single cell RNA-seq
47
WGBS
6
MeRIP-seq
Hi-C
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
188
Transcription
101
DNA binding
47
DNA methylation
1
DNA accessibility
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
24
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
58
September, 2018
41
May, 2022
38
August, 2017
38
February, 2023
37
July, 2018
33
April, 2018
32
February, 2021
16
September, 2020
14
November, 2019
14
October, 2019
8
May, 2021
6
November, 2020
3
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
Available data
237
bam
226
fastq
215
bigWig
141
tsv
68
bed narrowPeak
41
zippedFastqFolder
7
bigBed narrowPeak
3
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
tissue
272
primary cell
69
cell line
3
in vitro differentiated cells
Organ
425
liver
408
epithelium
344
pancreas
115
connective tissue
91
vasculature
85
blood vessel
72
heart
68
blood
68
bodily fluid
60
artery
55
kidney
37
embryo
20
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
240
AMP
100
HPAP
4
T1D
Genome assembly (visualization)
215
GRCh38
215
hg19
Lab
238
AMP-T2D consortium
100
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
59
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
ATAC-seq
Capture-C
Hi-C
biosample_type!
tissue
BIOSAMPLE
ASSAY
344 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
MeRIP-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
primary cell
pancreatic alpha cell
52
13
12
31
pancreatic beta cell
21
13
12
16
pancreatic ductal cell
4
13
10
pancreatic acinar cell
4
8
12
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
15
6
1
Panc1
13
1
in vitro differentiated cells
pancreatic PP cell
3
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