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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
ATAC-seq
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
534
DNA binding
164
Transcription
7
DNA methylation
6
DNA accessibility
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
678
bam
586
bigWig
463
fastq
404
bed narrowPeak
357
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
csv
Organism
714
Homo sapiens
Biosample type
368
cell line
319
tissue
15
in vitro differentiated cells
12
primary cell
Organ
714
liver
655
connective tissue
650
pancreas
485
adipose tissue
305
epithelium
303
heart
279
brain
185
vasculature
179
blood vessel
163
kidney
146
bone element
110
limb
96
artery
89
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
714
AMP
Genome assembly (visualization)
585
hg19
528
GRCh38
Lab
714
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
Capture-C
Hi-C
BIOSAMPLE
ASSAY
714 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
2
tissue
liver
145
147
2
3
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
hepatic stellate cell
1
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